Leidse hoogleraren vanaf 1575

Gerard Tonnis Barkema (Gerard)

Geboren
1965-10-15 te Sprang-Capelle, Nederland
Geslacht
Man

Promotie (1992)

Type examen
Promotie
Datum
1992-10-29
Plaats
Utrecht
Proefschrift
Monte Carlo methods on distributed systems

Bijzonder Hoogleraar (2006)

Benoeming
Bijzonder Hoogleraar
Faculteit
Wiskunde en Natuurwetenschappen
Vakgebied
Natuurkunde
Leeropdracht
Computational statistical physics of (Bio-)polymers
Datum benoeming
2006-03-27
Datum oratie
2007-01-19
Titel oratie
Theoretische Fysica in de Kennissamenleving
Bijzonderheden
Bijzondere leerstoel vanwege de Stichting Physica

Publicaties

Wetenschappelijk
  • Barkema G.T., Panja D. & Leeuwen J.M.J. van (2014), Semiflexible polymer dynamics with a bead-spring model, Journal of Statistical Mechanics: Theory and Experiment (P11008).
  • Kandemir E.B., Gonul B., Barkema G.T., Yu K.M., Walukiewicz W. & Wang L.W. (2014), Modeling of the atomic structure and electronic properties of amorphous GaN1-xAsx, Computational material science 82: 100-106.
  • Barkema G.T., Ferrari P.L., Lebowitz J.L. & Spohn H. (2014), Kardar-Parisi-Zhang universality class and the anchored Toom interface, Physical Review E 90(042116).
  • Schram R.D. & Barkema G.T. (2013), Universality of the triplet contact process with diffusion, Journal of Statistical Mechanics: Theory and Experiment P04020.
  • Pamja D., Barkema G.T. & Kolomeisky A.B. (2013), Through the eye of the needle: Recent advances in understanding biopolymer translocation., Journal of Physics : Condensed Matter 25(413101).
  • Schram R.D., Barkema G.T. & Schiessel H. (2013), On the stability of fractal globules, Journal of Chemical Physics 138(224901).
  • Walter J.C., Baiesi M., Barkema G.T. & Carlon E. (2013), Unwinding relaxation dynamics of polymers, Physical Review Letters 110(068301).
  • Schram R.D., Barkema G.T. & Bisseling R.H. (2013), Sawdoubler: A program for counting self-avoiding walks, Computer Physics Communications 184: 891-898.
  • Keesman R., Barkema G.T. & Panja D. (2013), Dynamical eigenmodes of a polymerized membrane, Journal of Statistical Mechanics: Theory and Experiment P04009.
  • Keesman R., Barkema G.T. & Panja D. (2013), Dynamical eigenmodes of star and tadpole polymers, Journal of Statistical Mechanics: Theory and Experiment P02021.
  • Schram R.D. & Barkema G.T. (2012), Critical exponents of the pair contact process with diffusion, Journal of Statistical Mechanics - Theory and Experiment.
  • Barkema G.T. & Leeuwen J.M.J. van (2012), A model for the dynamics of extensible semiflexible polymers, Journal of Statistical Mechanics - Theory and Experiment: 12019.
  • Safaverdi S., Barkema G.T., Kunnen E., Urbanowicz A.M. & Maes C. (2011), Saturation of front propagation in a reaction diffusion process describing plasma damage in porous low-k materials, Physical Review B 83(24).
  • Barkema G.T., Panja D. & Leeuwen J.M.J. van (2011), Structural modes of a polymer in the repton model, J.Chemical Physics 134(15).
  • Singh A., Mukherjee A., Vermeulen H.M., Barkema G.T. & Puri S. (2011), Control of structure formation in phase-separating systems, J.Chemical Physics 134(4).
  • Walter J.C., Barkema G.T. & Carlon E. (2011), The equilibrium winding angle of a polymer around a bar, Journal of Statistical Mechanics - Theory and Experiment P10020.
  • Huisman E.M., Heussinger C., Storm C. & Barkema G.T. (2010), Semi-flexible filamentous composites., Physical Review Letters 105: 118101.
  • Kuipers J. & Barkema G.T. (2010), Simulations of a non-Markovian description of nucleation., Journal of Chemical Physics 132: 184109.
  • Baiesi M., Barkema G.T., Carlon E. & Panja D. (2010), Unwinding dynamics of double-stranded polymers, Journal of Chemical Physics 133: 061801.
  • Baiesi M., Barkema G.T. & Carlon E. (2010), Elastic lattice polymers., Physical Review E 81: 061801.
  • Panja D. & Barkema G.T. (2010), Simulations of two-dimensional unbiased polymer translocation using the bond fluctuation model., Journal of Chemical Physics 132: 014902.
  • Stuiver A. & Barkema G.T. (2010), Simulations of color development in tinted paints., Journal of Colloid and Interface Science 344: 256.
  • Kuipers J. & Barkema G.T. (2009), Non-Markovian dynamics of clusters during nucleation, Physical Review E 6.
  • Panja D., Barkema G.T. & Kolomeisky A.B. (2009), Non-equilibrium dynamics of single polymer adsorption to solid surfaces, Journal of Physics-Condensed Matter 21(24)(242101).
  • Panja D. & Barkema G.T. (2009), Rouse modes of self-avoiding flexible polymers, Journal of Chemical Physics 131 (15)(154903).
  • Vocks H., Panja D. & Barkema G.T. (2009), Amplitude and frequency spectra of thermal fluctuations of a translocating RNA molecule, Journal of Physics-Condensed Matter 21(37)(375105).
  • Panja D., Barkema G.T. & Ball R.C (2009), Reply to the comment on "Anomalous dynamics of unbiased polymer translocation through a narrow pore", Journal of Physics-Condensed Matter 21 (9)(098002).
  • Kroll K.M., Barkema G.T. & Carlon E. (2009), Linear model for fast background substraction in oligonucleotide microarrays, Algorithms for Molecular Biology 4(15).
  • Smallenburg F. & Barkema G.T. (2008), Universality class of the pair contact process with diffusion, Physical Review E 78(3).
  • Kuipers J. & Barkema G.T. (2008), Unbiased computation of transition times by pathway recombination, Journal of Chemical Physics 128(17).
  • Panja D., Barkema G.T. & Ball R.C. (2008), Polymer translocation out of planar confinements, Journal of Physics : Condensed Matter 20(7).
  • Kroll K.M., Barkema G.T. & Carlon E. (2008), Modeling background intensity in DNA microarrays, Physical Review E 77(6).
  • Vocks H., Panja D., Barkema G.T. & Ball R.C. (2008), Pore-blockade times for field-driven polymer translocation, Journal of Physics : Condensed Matter 20(9).
  • Huisman E.M., Storm C. & Barkema G.T. (2008), Monte Carlo study of multiply crosslinked semiflexible polymer networks, Physical Review E 78(5).
  • Panja D. & Barkema G.T. (2008), Passage times for polymer translocation pulled through a narrow pore, Biophysical Journal 94(5): 1630-1637.
  • Panja D., Barkema G.T. & Ball R.C. (2007), Anomalous dynamics of unbiased polymer translocation through a narrow pore, Journal of Physics : Condensed Matter 19(43): 1-12.
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Links

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